| 1 | Michael Schär | Team Vontobel | 7'54 |
| 2 | Chris Barton | Team Type 1 | + 1 |
| 3 | Domingos Gonçalves | Prio - Porto | + 2 |
| 4 | Phan Age Haugard | Swedbank-PEAB | + 4 |
| 5 | Samuel Pökälä | DeLaval - Kiitokori | + 5 |
| 6 | Reinhardt Janse van Rensburg | Project: Africa | + 7 |
| 7 | Andreas Hofer | Sauber Petronas Racing | s.t. |
| 8 | Nelson Oliveira | Prio - Porto | + 8 |
| 9 | Tiziano Dall'Antonia | Mobil - Aeropostal Ciclismo | + 9 |
| 10 | Abdelmalek Madani | Eritel - Sonatrach | + 11 |
| 11 | William Bonnet | Euskaltel-Air France | s.t. |
| 12 | Vladimir Karpets | cycleYorkshire s/b ASDA - Savers | + 12 |
| 13 | Imanol Erviti | ONCE-Eroski | + 14 |
| 14 | Chad Haga | Chiquita - Universal p/b Minions | s.t. |
| 15 | Blake Caldwell | Project: Africa | s.t. |
| 16 | Azzeddine Lagab | Eritel - Sonatrach | s.t. |
| 17 | Mykhaylo Kononenko | Children of Chernobyl Foundation p/b Nemiroff | + 15 |
| 18 | Mario Gonzalez Salas | ONCE-Eroski | s.t. |
| 19 | Youcef Reguigui | Eritel - Sonatrach | s.t. |
| 20 | Serghei Tvetcov | cycleYorkshire s/b ASDA - Savers | + 16 |
| 21 | Mark Griffith | Chiquita - Universal p/b Minions | s.t. |
| 22 | Miguel Angel Benito | ONCE-Eroski | s.t. |
| 23 | Marios Athanasiades | Children of Chernobyl Foundation p/b Nemiroff | s.t. |
| 24 | John-Lee Augustyn | Project: Africa | s.t. |
| 25 | Rafael Reis | Prio - Porto | s.t. |
| 26 | Pedro Nicácio | Bonsucro | + 17 |
| 27 | Joe Eldridge | Team Type 1 | s.t. |
| 28 | Riccardo Zoidl | Sauber Petronas Racing | + 18 |
| 29 | Kiel Reijnen | Bonsucro | s.t. |
| 30 | Sten Stenersen | Swedbank-PEAB | s.t. |
| 31 | Dmitriy Gruzdev | Children of Chernobyl Foundation p/b Nemiroff | s.t. |
| 32 | Jonas Bjelkmark | Swedbank-PEAB | s.t. |
| 33 | Maciej Ulanowski | Children of Chernobyl Foundation p/b Nemiroff | s.t. |
| 34 | Thomas Lövkvist | Swedbank-PEAB | s.t. |
| 35 | Caleb Ewan | Lululemon/Bulgaria Blackfish | + 19 |
| 36 | Raúl Granjel Cabrera | Mobil - Aeropostal Ciclismo | s.t. |
| 37 | Thomas Rohregger | Sauber Petronas Racing | s.t. |
| 38 | Oleksandr Golovash | ONCE-Eroski | + 20 |
| 39 | Erick Rowsell | Eritel - Sonatrach | s.t. |
| 40 | Richard Antonio Carapaz | ONCE-Eroski | s.t. |
| 41 | Mateusz Taciak | DeLaval - Kiitokori | s.t. |
| 42 | Thomas Peterson | Team Type 1 | + 21 |
| 43 | Linus Dahlberg | DeLaval - Kiitokori | s.t. |
| 44 | Martin Kohler | Team Vontobel | s.t. |
| 45 | Timothy Duggan | Chiquita - Universal p/b Minions | s.t. |
| 46 | Martijn Verschoor | Team Type 1 | s.t. |
| 47 | Azizulhasni Awang | Sauber Petronas Racing | s.t. |
| 48 | Basilio Ramos Ticona | Bonsucro | + 22 |
| 49 | Andrei Kashechkin | Children of Chernobyl Foundation p/b Nemiroff | s.t. |
| 50 | Jaroslav Popovych | Children of Chernobyl Foundation p/b Nemiroff | + 23 |
| 51 | Edoardo Zardini | Sauber Petronas Racing | s.t. |
| 52 | Branislav Samoilev | DeLaval - Kiitokori | s.t. |
| 53 | Bernardo Colex | DeLaval - Kiitokori | s.t. |
| 54 | Curtis Dearden | cycleYorkshire s/b ASDA - Savers | s.t. |
| 55 | Jacques Janse van Rensburg | Project: Africa | + 24 |
| 56 | Juan José Haedo | cycleYorkshire s/b ASDA - Savers | s.t. |
| 57 | Antonio Carvalho | Prio - Porto | s.t. |
| 58 | Craig Lewis | Team Type 1 | + 25 |
| 59 | Delio Fernandez | Euskaltel-Air France | s.t. |
| 60 | Luis Miguel Mansilla | Bonsucro | s.t. |
| 61 | Valentin Stoenchev | Lululemon/Bulgaria Blackfish | s.t. |
| 62 | Jean Bosco Nsengimana | Project: Africa | + 26 |
| 63 | Tyler Farrar | Azteca-NBCSN | s.t. |
| 64 | Jose Mojica | Mobil - Aeropostal Ciclismo | + 27 |
| 65 | Honorio Machado | Mobil - Aeropostal Ciclismo | s.t. |
| 66 | Jaime Alberto Castañeda | Bonsucro | s.t. |
| 67 | Pierre Paolo Penasa | Team Vontobel | s.t. |
| 68 | Pedro Sequera | Mobil - Aeropostal Ciclismo | + 28 |
| 69 | Walter Pedraza | Mobil - Aeropostal Ciclismo | s.t. |
| 70 | Natnael Berhane | Eritel - Sonatrach | s.t. |
| 71 | Juan Villegas | Azteca-NBCSN | + 29 |
| 72 | David Arroyo | Euskaltel-Air France | s.t. |
| 73 | Maxim Iglinski | Bonsucro | s.t. |
| 74 | Daniel Allonca | Prio - Porto | s.t. |
| 75 | Rafael Infantino | Euskaltel-Air France | s.t. |
| 76 | Andriy Orlov | Children of Chernobyl Foundation p/b Nemiroff | + 30 |
| 77 | Théry Schir | Team Vontobel | s.t. |
| 78 | Jackson RodrÃguez | Azteca-NBCSN | s.t. |
| 79 | Mauro Santambrogio | Chiquita - Universal p/b Minions | + 31 |
| 80 | Lluis Mas | Prio - Porto | s.t. |
| 81 | Isaac Bolivar | Lululemon/Bulgaria Blackfish | s.t. |
| 82 | Aberlardo Ablenado | ONCE-Eroski | s.t. |
| 83 | Geoffrey Soupe | Lululemon/Bulgaria Blackfish | s.t. |
| 84 | Igor Antón | ONCE-Eroski | s.t. |
| 85 | Alex Diniz | Bonsucro | s.t. |
| 86 | Raymond Kreder | Swedbank-PEAB | + 32 |
| 87 | Nairo Quintana | Azteca-NBCSN | + 33 |
| 88 | Lars Croket | Project: Africa | s.t. |
| 89 | Haritz Orbe | Euskaltel-Air France | + 34 |
| 90 | Roberto Ferrari | cycleYorkshire s/b ASDA - Savers | s.t. |
| 91 | Reto Hollenstein | Team Vontobel | s.t. |
| 92 | Petar Panayotov | Lululemon/Bulgaria Blackfish | + 35 |
| 93 | Alex Howes | Chiquita - Universal p/b Minions | s.t. |
| 94 | Armindo Fonseca | Team Vontobel | s.t. |
| 95 | Taylor Tolleson | Chiquita - Universal p/b Minions | s.t. |
| 96 | Fabio Montenegro | Chiquita - Universal p/b Minions | + 37 |
| 97 | Max Öste-Macdonald | Swedbank-PEAB | + 38 |
| 98 | Peter Stetina | Project: Africa | s.t. |
| 99 | Paúl Torres | Mobil - Aeropostal Ciclismo | s.t. |
| 100 | Troels Vinther | Swedbank-PEAB | s.t. |
| 101 | Kévin Reza | Euskaltel-Air France | s.t. |
| 102 | Momchil Robov | Lululemon/Bulgaria Blackfish | + 39 |
| 103 | Jimmi Briceno | Azteca-NBCSN | s.t. |
| 104 | Winner Anacona | DeLaval - Kiitokori | s.t. |
| 105 | Michael Woods | cycleYorkshire s/b ASDA - Savers | s.t. |
| 106 | Shaquille Sinclair | Chiquita - Universal p/b Minions | + 40 |
| 107 | Anuar Manan | Sauber Petronas Racing | + 42 |
| 108 | Rui Pedro Vinhas | Prio - Porto | s.t. |
| 109 | César Rojas Villegas | ONCE-Eroski | + 43 |
| 110 | Javier Mejias | Team Type 1 | s.t. |
| 111 | Rodrigo Nascimento | Prio - Porto | s.t. |
| 112 | Adrien Niyonshuti | Project: Africa | s.t. |
| 113 | Julian David Arredondo | Euskaltel-Air France | s.t. |
| 114 | Tosh Van der Sande | Eritel - Sonatrach | s.t. |
| 115 | Borislav Ivanov | Lululemon/Bulgaria Blackfish | s.t. |
| 116 | Tesfar Teklit | Eritel - Sonatrach | + 45 |
| 117 | Marco Zafferani | Sauber Petronas Racing | s.t. |
| 118 | Marco Corti | cycleYorkshire s/b ASDA - Savers | s.t. |
| 119 | Juan Murillo | Azteca-NBCSN | + 46 |
| 120 | Leris Moukagni | Control Team | s.t. |
| 121 | Ruud Cremers | Team Type 1 | s.t. |
| 122 | Iman Suparman | Children of Chernobyl Foundation p/b Nemiroff | s.t. |
| 123 | Juan Van Heerden | Eritel - Sonatrach | + 47 |
| 124 | Remo Schuler | Team Vontobel | s.t. |
| 125 | Simon Richardson | cycleYorkshire s/b ASDA - Savers | s.t. |
| 126 | Sakari Lehtinen | DeLaval - Kiitokori | s.t. |
| 127 | Theo Eltink | Swedbank-PEAB | s.t. |
| 128 | Jocelin Maillet | Team Vontobel | + 48 |
| 129 | Félix Emilio Besada | Mobil - Aeropostal Ciclismo | + 49 |
| 130 | Romain Bardet | Lululemon/Bulgaria Blackfish | + 51 |
| 131 | Hossein Alizadeh | Sauber Petronas Racing | s.t. |
| 132 | Allan Danger | Control Team | + 54 |
| 133 | Chris Anker Sørensen | DeLaval - Kiitokori | + 56 |
| 134 | Nicolas Winter | Control Team | s.t. |
| 135 | Jorge Adelbo Soto Pereira | Bonsucro | + 1'00 |
| 136 | César Vaquera | Azteca-NBCSN | + 1'01 |
| 137 | David López Garcia | Euskaltel-Air France | + 1'02 |
| 138 | Marc Codrington | Azteca-NBCSN | + 1'11 |